Bio2RDF

Bio2rdf : A semantic web atlas of post genomic knowledge about human and mouse. The Bio2RDF project uses a data integration approach based on semantic web rules to answer a broad question: What is known about the mouse and human genomes? Using its rdfizing services, a semantic mashup of 65 million triples was built from 30 public bioinformatics data providers: GO, NCBI, UniProt, KEGG, PDB and many others. The average link-rank (ALR) of a node is 4.7 which means that a usual topic is connected to 4.7 other topics by direct or reverse links within the warehouse. A knowledge map of the graph and descriptive statistics about its content are presented. A downloadable version of the Bio2RDF Atlas graph in N3 format is available at url{http://bio2rdf.org/download}.


References in zbMATH (referenced in 10 articles , 2 standard articles )

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  1. Kralj, Jan; Robnik-Sikonja, Marko; Lavrac, Nada: NetSDM: semantic data mining with network analysis (2019)
  2. Zaveri, Amrapali; Ertaylan, Gökhan: Linked data for life sciences (2017)
  3. Callahan, Alison; Cruz-Toledo, José; Ansell, Peter; Dumontier, Michel: Bio2rdf release 2: Improved coverage, interoperability and provenance of life science linked data (2013) ioport
  4. Fink, J. Lynn; Fernicola, Pablo; Chandran, Rahul; Parastatidis, Savas; Wade, Alex; Naim, Oscar; Quinn, Greg B.; Bourne, Philip E.: Word add-in for ontology recognition: semantic enrichment of scientific literature (2010) ioport
  5. Lehmann, Jens; Hitzler, Pascal: Concept learning in description logics using refinement operators (2010)
  6. Anwar, Nadia; Hunt, Ela: \textitfrancisellatularensis novicidaproteomic and transcriptomic data integration and annotation based on semantic web technologies (2009) ioport
  7. Cheung, Kei-Hoi; Frost, H. Robert; Marshall, M. Scott; Prud’hommeaux, Eric; Samwald, Matthias; Zhao, Jun; Paschke, Adrian: A journey to semantic web query federation in the life sciences (2009) ioport
  8. De La Calle, Guillermo; García-Remesal, Miguel; Chiesa, Stefano; De La Iglesia, Diana; Maojo, Victor: BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature (2009) ioport
  9. Qu, Xiaoyan A.; Gudivada, Ranga Chandra; Jegga, Anil G.; Neumann, Eric K.; Aronow, Bruce J.: Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships (2009) ioport
  10. Belleau, François; Tourigny, Nicole; Good, Benjamin; Morissette, Jean: Bio2rdf : A semantic web atlas of post genomic knowledge about human and mouse (2008) ioport