The Molecular Modelling Toolkit (MMTK) is an Open Source program library for molecular simulation applications. In addition to providing ready-to-use implementations of standard algorithms, MMTK serves as a code basis that can be easily extended and modified to deal with standard and non-standard problems in molecular simulations.

References in zbMATH (referenced in 9 articles )

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  1. Nicolas Renaud; Cunliang Geng: The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries (2020) not zbMATH
  2. Berk Ekmekci, Charles E. McAnany, Cameron Mura: An Introduction to Programming for Bioscientists: A Python-based Primer (2016) arXiv
  3. Solernou, Albert; Fernández-Recio, Juan: Protein docking by rotation-based uniform sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation (2010) ioport
  4. Férey, N.; Nelson, J.; Martin, C.; Picinali, L.; Bouyer, G.; Tek, A.; Bourdot, P.; Burkhardt, J. M.; Katz, B. F. G.; Ammi, M.: Multisensory VR interaction for protein-docking in the (CoRSAIRe) project (2009) ioport
  5. Dalcín, Lisandro; Paz, Rodrigo; Storti, Mario; D’elía, Jorge: MPI for python: performance improvements and MPI-2 extensions (2008) ioport
  6. Köstler, H.; Schmid, R.; Rüde, U.; Scheit, Ch.: A parallel multigrid accelerated Poisson solver for ab initio molecular dynamics applications (2007) ioport
  7. Knight, William; Hill, Walter; Lodmell, J. Stephen: Ribosome Builder: a software project to simulate the ribosome (2005)
  8. Makrodimitris, Kosta; Fernandez, Erik J.; Woolf, Thomas B.; O’Connell, John P.: ALLD: an object-oriented mesoscopic simulation program for polar biomolecules in hydrophobic chromatography or biomembranes (2005)
  9. Hinsen, Konrad: The molecular modeling toolkit: A new approach to molecular simulations. (2000) ioport