Gillespie.jl
Gillespie.jl (Frost 2016) is a Julia package for stochastic simulation using Gillespie’s direct method (sometimes called the Doob-Gillespie algorithm) (Doob 1945; Gillespie 1977), an approach widely used in many elds, including systems biology and epidemiology. It borrows the basic interface (although none of the code) from the R library GillespieSSA by Mario Pineda-Krch (Pineda-Krch 2008), although Gillespie.jl only implements the standard exact method at present, whereas GillespieSSA also includes other methods, such as tau-leaping, etc.. Gillespie.jl is intended to o er performance on par with hand-coded C code, while maintaining a simple but exible interface.
Keywords for this software
References in zbMATH (referenced in 2 articles , 1 standard article )
Showing results 1 to 2 of 2.
Sorted by year (- Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary Sehl: BioSimulator.jl: Stochastic simulation in Julia (2018) arXiv
- Simon DW Frost: Gillespie.jl: Stochastic Simulation Algorithm in Julia (2016) not zbMATH