PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials. Atomic neural networks (ANNs) constitute a class of machine learning methods for predicting potential energy surfaces and physico-chemical properties of molecules and materials. Despite many successes, developing interpretable ANN architectures and implementing existing ones efficiently are still challenging. This calls for reliable, general-purpose and open-source codes. Here, we present a python library named PiNN as a solution toward this goal. In PiNN, we implemented an interpretable graph convolutional neural network variant, PiNet, as well as the established Behler-Parrinello high-dimensional neural network potential. These implementations were tested using datasets of isolated small molecules, crystalline materials, liquid water and an aqueous alkaline electrolyte. PiNN comes with a visualizer called PiNNBoard to extract chemical insight “learned” by ANNs, provides analytical stress tensor calculations and interfaces to both the Atomic Simulation Environment and a development version of the Amsterdam Modeling Suite. Moreover, PiNN is highly modularized which makes it useful not only as a standalone package but also as a chain of tools to develop and to implement novel ANNs. The code is distributed under a permissive BSD license and is freely accessible at this https URL with full documentation and tutorials.
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- Yunqi Shao, Matti Hellström, Pavlin D. Mitev, Lisanne Knijff, Chao Zhang: PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials (2019) arXiv