TRuML

TRuML is a Translator for Rule-based Modeling Languages. TRuML is designed to convert between systems biology models written in the Kappa or BioNetGen (BNGL) languages. While not all models can be converted between the two languages, most features of these languages are mutually compatible.

Keywords for this software

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References in zbMATH (referenced in 2 articles )

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  1. Eshan D. Mitra, Ryan Suderman, Joshua Colvin, Alexander Ionkov, Andrew Hu, Herbert M. Sauro, Richard G. Posner, William S. Hlavacek: PyBioNetFit and the Biological Property Specification Language (2019) arXiv
  2. Suderman, Ryan; Mitra, Eshan D.; Lin, Yen Ting; Erickson, Keesha E.; Feng, Song; Hlavacek, William S.: Generalizing Gillespie’s direct method to enable network-free simulations (2019)