MOSBIE (MOdel Simulation Browser and Interactive Explorer): MOSBIE: a tool for comparison and analysis of rule-based biochemical models. Results: We present the development and features of an interactive model exploration system, MOSBIE, which provides utilities for identifying similarities and differences between models within a family. Models are clustered using a custom similarity metric, and a visual interface is provided that allows a researcher to interactively compare the structures of pairs of models as well as view simulation results.

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