PyBoolNet: a python package for the generation, analysis and visualization of boolean networks. Results: PYBOOLNET is a Python package for working with Boolean networks that supports simple access to model checking via NUSMV, standard graph algorithms via NETWORKX and visualization via DOT. In addition, state of the art attractor computation exploiting POTASSCO ASP is implemented. The package is function-based and uses only native Python and NETWORKX data types.

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  1. John Zobolas; Martin Kuiper; ├ůsmund Flobak: emba: R package for analysis and visualization of biomarkers in boolean model ensembles (2020) not zbMATH