SCOWLP

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. SCOWLP (S tructural C haracterization O f W ater, L igands and P roteins) is a user-friendly and publicly accessible web-based relational database for detailed characterization and visualization of the PDB protein interfaces. The SCOWLP database includes proteins, peptidic-ligands and interface water molecules as descriptors of protein interfaces. It contains currently 74,907 protein interfaces and 2,093,976 residue-residue interactions formed by 60,664 structural units (protein domains and peptidic-ligands) and their interacting solvent. The SCOWLP web-server allows detailed structural analysis and comparisons of protein interfaces at atomic level by text query of PDB codes and/or by navigating a SCOP-based tree. It includes a visualization tool to interactively display the interfaces and label interacting residues and interface solvent by atomic physicochemical properties. SCOWLP is automatically updated with every SCOP release

References in zbMATH (referenced in 3 articles )

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  1. Mezei, Mihaly: Statistical properties of protein-protein interfaces (2015)
  2. Steinkellner, Georg; Rader, Robert; Thallinger, Gerhard G.; Kratky, Christoph; Gruber, Karl: Vasco: computation and visualization of annotated protein surface contacts (2009) ioport
  3. Teyra, Joan; Paszkowski-Rogacz, Maciej; Anders, Gerd; Pisabarro, M. Teresa: SCOWLP classification: Structural comparison and analysis of protein binding regions (2008) ioport