TFExplorer: integrated analysis database for predicted transcription regulatory elements. Summary: TFExplorer is a web-based integrated database for predicted regulatory elements in human, mouse and rat. It shows predicted binding sites of transcription factors in the promoter regions, along with their phylogenetic footprinting information. In addition, TFExplorer can search for genes that have a given sequence pattern in their promoter regions using the motif-searching method. Availability: TFExplorer is freely available at

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  1. Mosig, Axel; Bıyıkoğlu, Türker; Prohaska, Sonja J.; Stadler, Peter F.: Discovering cis-regulatory modules by optimizing barbecues (2009)