JPred: a consensus secondary structure prediction server. An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified. AVAILABILITY: tml CONTACT:

References in zbMATH (referenced in 7 articles )

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  1. Yang, Bingru; Qu, Wu; Wang, Lijun; Zhou, Ying: A new intelligent prediction system model-the compound pyramid model (2012) ioport
  2. Bakheet, Tala; Doig, Andrew J.: Properties and identification of antibiotic drug targets (2010) ioport
  3. Green, James R.; Korenberg, Michael J.; Aboul-Magd, Mohammed O.: PCI-SS: MISO dynamic nonlinear protein secondary structure prediction (2009) ioport
  4. Kountouris, Petros; Hirst, Jonathan D.: Prediction of backbone dihedral angles and protein secondary structure using support vector machines (2009) ioport
  5. Carugo, Oliviero: Detailed estimation of bioinformatics prediction reliability through the fragmented prediction performance plots (2007) ioport
  6. Eskow, Elizabeth; Bader, Brett; Byrd, Richard; Crivelli, Silvia; Head-Gordon, Teresa; Lamberti, Vincent; Schnabel, Robert: An optimization approach to the problem of protein structure prediction (2004)
  7. Simossis, V. A.; Heringa, J.: The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods (2004)