YADA: a tool for taking the most out of high-resolution spectra. Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada

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References in zbMATH (referenced in 3 articles )

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  1. Glodek, Anna; PolaƄska, Joanna: Method for deisotoping based on fuzzy inference systems (2018)
  2. Yuan, Zheng; Shi, Jinhong; Lin, Wenjun; Chen, Bolin; Wu, Fang-Xiang: Features-based deisotoping method for tandem mass spectra (2011) ioport
  3. Carvalho, Paulo C.; Xu, Tao; Han, Xuemei; Cociorva, Daniel; Barbosa, Valmir C.; Iii, John R. Yates: YADA: a tool for taking the most out of high-resolution spectra (2009) ioport