comput-biol: source code for Combinatorial Pattern Matching Algorithms in Computational Biology using Perl and R, by Gabriel Valiente. It has been tested using Perl version 5.8.6 (BioPerl version 1.5) and R version 2.7.1 (seqinr version 1.1-7 and APE version 2.1-3).

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References in zbMATH (referenced in 3 articles , 1 standard article )

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  1. Asano, Tetsuo; Jansson, Jesper; Sadakane, Kunihiko; Uehara, Ryuhei; Valiente, Gabriel: Faster computation of the Robinson-Foulds distance between phylogenetic networks (2012)
  2. Veeramalai, Mallika; Gilbert, David; Valiente, Gabriel: An optimized TOPS+ comparison method for enhanced TOPS models (2010) ioport
  3. Valiente, Gabriel: Combinatorial pattern matching algorithms in computational biology using Perl and R. (2009)