BoolNet: Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks Provides methods to reconstruct and generate synchronous, asynchronous, and probabilistic Boolean networks, and to analyze and visualize attractors in Boolean networks

References in zbMATH (referenced in 15 articles )

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  1. Zobolas, John; Monteiro, Pedro T.; Kuiper, Martin; Flobak, Åsmund: Boolean function metrics can assist modelers to check and choose logical rules (2022)
  2. John Zobolas; Martin Kuiper; Åsmund Flobak: emba: R package for analysis and visualization of biomarkers in boolean model ensembles (2020) not zbMATH
  3. Vladyslav Oles; Anton Kukushkin: BoolSi: A Tool for Distributed Simulations and Analysis of Boolean Networks (2020) not zbMATH
  4. Hou, Wenpin; Ruan, Peiying; Ching, Wai-Ki; Akutsu, Tatsuya: On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors (2019)
  5. Macauley, Matthew; Jenkins, Andy; Davies, Robin: The regulation of gene expression by operons and the local modeling framework (2019)
  6. Menini, Laura; Possieri, Corrado; Tornambè, Antonio: Boolean network analysis through the joint use of linear algebra and algebraic geometry (2019)
  7. Mortveit, Henning S.; Pederson, Ryan D.: Attractor stability in finite asynchronous biological system models (2019)
  8. von Stechow, Louise (ed.); Delgado, Alberto Santos (ed.): Computational cell biology. Methods and protocols (2018)
  9. Dinwoodie, Ian H.: Computational methods for asynchronous basins (2016)
  10. Dinwoodie, Ian H.; Pandya, Kruti: Exact tests for singular network data (2015)
  11. Klarner, Hannes; Bockmayr, Alexander; Siebert, Heike: Computing maximal and minimal trap spaces of Boolean networks (2015)
  12. Maucher, Markus; Kracht, David V.; Schober, Steffen; Bossert, Martin; Kestler, Hans A.: Inferring Boolean functions via higher-order correlations (2014)
  13. Hopfensitz, Martin; Müssel, Christoph; Maucher, Markus; Kestler, Hans A.: Attractors in Boolean networks: a tutorial (2013)
  14. He, Yong; Zeng, Jin; Wu, Min; Zhang, Chuan-Ke: Robust stabilization and (H_\infty) controllers design for stochastic genetic regulatory networks with time-varying delays and structured uncertainties (2012)
  15. Müssel, Christoph; Hopfensitz, Martin; Kestler, Hans A.: Boolnet - an R package for generation, reconstruction and analysis of Boolean networks (2010) ioport