MrBayes

MrBayes: Bayesian Inference of Phylogeny. MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.


References in zbMATH (referenced in 56 articles )

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  1. Collienne, Lena; Gavryushkin, Alex: Computing nearest neighbour interchange distances between ranked phylogenetic trees (2021)
  2. Garba, M. K.; Nye, Tom M. W.; Lueg, J.; Huckemann, S. F.: Information geometry for phylogenetic trees (2021)
  3. Heaps, Sarah E.; Nye, Tom M. W.; Boys, Richard J.; Williams, Tom A.; Cherlin, Svetlana; Embley, T. Martin: Generalizing rate heterogeneity across sites in statistical phylogenetics (2020)
  4. Klawitter, Jonathan: The agreement distance of unrooted phylogenetic networks (2020)
  5. Lubiw, Anna; Maftuleac, Daniela; Owen, Megan: Shortest paths and convex hulls in 2D complexes with non-positive curvature (2020)
  6. Spade, David A.: An extended model for phylogenetic maximum likelihood based on discrete morphological characters (2020)
  7. Spade, David A.: Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths (2020)
  8. Allman, Elizabeth S.; Long, Colby; Rhodes, John A.: Species tree inference from genomic sequences using the log-det distance (2019)
  9. April M Wright: treesiftr: An R package and server for viewing phylogenetic trees and data (2019) not zbMATH
  10. Monod, Anthea; Kališnik, Sara; Patiño-Galindo, Juan Ángel; Crawford, Lorin: Tropical sufficient statistics for persistent homology (2019)
  11. Warnow, Tandy (ed.): Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret (2019)
  12. Allman, Elizabeth S.; Degnan, James H.; Rhodes, John A.: Split probabilities and species tree inference under the multispecies coalescent model (2018)
  13. Bouchard-Côté, Alexandre; Vollmer, Sebastian J.; Doucet, Arnaud: The bouncy particle sampler: a nonreversible rejection-free Markov chain Monte Carlo method (2018)
  14. Liu, Yong; Chen, Jingan; Qian, Jieying; Lin, Hao; Sun, Ning; Huang, Zunnan: Evolutionary analysis and structural characterization of \textitAquilariasinensis sesquiterpene synthase in agarwood formation: a computational study (2018)
  15. Stadler, Tanja; Gavryushkina, Alexandra; Warnock, Rachel C. M.; Drummond, Alexei J.; Heath, Tracy A.: The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes (2018)
  16. Venelin Mitov; Tanja Stadler: Parallel likelihood calculation for phylogenetic comparative models: The SPLITT C++ library (2018) not zbMATH
  17. Bordewich, Magnus; Linz, Simone; Semple, Charles: Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks (2017)
  18. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  19. Whidden, Chris; Matsen, Frederick A. IV: Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph (2017)
  20. Ioanna Manolopoulou, Axel Hille: BPEC: An R Package for Bayesian Phylogeographic and Ecological Clustering (2016) arXiv

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