Natalie

natalie is a tool for pairwise global network alignment [1]. The current version is capable of reading in graphs in GraphML, GML, LGF (lemon graph format), and STRING format and computes an alignment. Output visualization is still very much neglected, but will be realized in the future. Source code is available upon request.

Keywords for this software

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References in zbMATH (referenced in 3 articles )

Showing results 1 to 3 of 3.
Sorted by year (citations)

  1. Malmi, Eric; Chawla, Sanjay; Gionis, Aristides: Lagrangian relaxations for multiple network alignment (2017)
  2. El-Kebir, Mohammed; Heringa, Jaap; Klau, Gunnar W.: Natalie 2.0: sparse global network alignment as a special case of quadratic assignment (2015)
  3. Ibragimov, Rashid; Malek, Maximilian; Guo, Jiong; Baumbach, Jan: GEDEVO: an evolutionary graph edit distance algorithm for biological network alignment (2013)